How to Handle Payroll for Remote Employees in Multiple States

How to Handle Payroll for Remote Employees in Multiple States

A coast-to-coast team can boost talent reach yet it also turns payday into a maze of state rules. Each location has its income tax thresholds, unemployment rates and filing calendars. Miss one rule and the penalty letter will find you fast. Follow the steps below to stay compliant, protect cash flow and keep every employee confident about the next deposit.

1. Register Everywhere You Pay

The moment a remote hire signs an offer, your company creates a tax presence in that state. File for Employer Identification Number (EIN) on the state portal, then set up accounts for withholding unemployment and disability taxes, if required. Keep confirmation emails in a folder so that auditors can see that you acted in a timely manner.

2. Track Where Work Happens

Many workers move between states during the year. Use a simple time-tracking app that logs work hours by GPS or self-reported location. Accurate records prove which state earned the income in case two agencies claim the same wages. Regular location checks also help define the nexus between sales tax and business filings.

3. Withhold Correct State Income Tax

Some states tax based on where the work is performed, while others tax based on where the worker resides. A few do both. Have each employee complete the correct state W-4 form. Adjust the withholding tables in your payroll software so that the system pulls the correct rate every time it runs. Review reciprocity agreements, such as the one between Pennsylvania and New Jersey, to avoid double taxation.

4. Pay State Unemployment and Local Levies

State unemployment insurance rates change annually based on a state's claims history. Update the rate letter in your payroll setup annually, typically in January. Certain cities, such as Denver and Portland, also impose local taxes. Add those as separate codes so they flow to the right quarterly form.

5. Offer a Portable Retirement Plan

A nationwide 401(k) keeps benefits even when workers cross borders. Confirm that the plan document meets each state’s requirements for auto-enroll notices and fee disclosures. Align payroll cuts with the provider’s schedule so that deferrals are made within the Department of Labor’s safe window. Consistent deposits build trust and reduce the number of questions directed to HR.

6. Choose a Payroll Service Built for Multi-State Teams

The right platform auto-calculates state tax files, quarterly returns and sends W-2s on one dashboard. Look for features such as real-time Nexus alerts and direct integration with your accounting software. A strong partner enables you to focus on growth while maintaining an audit-ready backend.

Multi-state payroll may sound complex yet a clear process and the right tools turn it into a routine task. Register promptly, track work locations, apply the correct tax tables and keep benefits portable. Need a guided setup and ongoing support? Reach out to our accounting team today and we will tailor a payroll system that pays everyone on time, meets every state's rules, and frees you to lead your remote workforce with confidence.

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